publications
For the most up to date publication list, please visit my ORCID (0000-0002-0271-2576) page.
publications in scientific journals
16. Souto-Maior C. “Extraordinarily corrupt or statistically commonplace? Reproducibility crises may stem from a lack of understanding of outcome probabilities”. PeerJ 2025 13:e18972 [doi: 10.7717/peerj.18972]
15. Souto-Maior C, Lin Y, Serrano Negron YL, Harbison ST. “Multiple shifts in gene network interactions shape phenotypes of Drosophila melanogaster selected for long and short night sleep duration”. PLOS Computational Biology 2023 19(8):e1011389 [doi: 10.1371/journal.pcbi.1011389].
14. Gomes MGM, Ferreira MU, Corder RM, King JG, Souto-Maior C, Penha-Gonçalves C, Gonçalves G, Chikina M, Pegden W, Aguas R. “Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold”. Journal of theoretical biology 2022;540: 111063. [doi: 10.1016/j.jtbi.2022.111063]
13. Souto-Maior C, King, JG, Sartori LM, Maciel-de-Freitas R, Gomes MGM. Reply to: “Enhancement of Aedes aegypti susceptibility to dengue by Wolbachia is not supported”. Nature Comunications 2020;11: 6113. [doi: 10.1038/s41467-020-19831-5]
12. Souto-Maior C, Serrano Negron, YL Harbison ST. Natural selection on sleep duration in Drosophila melanogaster. Scientific Reports 2020;10: 20652. [doi: 10.1038/s41598-020-77680-0]
11. King JG§, Souto-Maior C§, Sartori L, Maciel-de-Freitas R, Gomes MGM. Variation in Wolbachia effects on Aedes mosquitoes as a determinant of invasiveness and vectorial capacity. Nature Communications 2018;9: 1483. [doi: 10.1038/s41467-018-03981-8]
10. Souto-Maior C§, Sylvestre G§, Dias FBS, Gomes MGM, Maciel-De-Freitas R. Model-based inference from multiple dose, time course data reveals Wolbachia effects on infection profiles of type 1 dengue virus in Aedes aegypti. PLoS Negl Trop Dis 2018;12:e0006339. [doi: 10.1371/journal.pntd.0006339] [data] [code]
9. Souto-Maior C, Rasmussen DA, Maciel-De-Freitas R, Gomes MGM. A51 Dengue virus multi-strain models as hypotheses for serotype interaction. Virus Evol. 2017;3(Suppl 1):vew036.050. [doi: 10.1093/ve/vew036.050]
8. Gomes MGM, Gjini E, Lopes JS, Souto-Maior C, Rebelo C. A theoretical framework to identify invariant thresholds in infectious disease epidemiology. J Theor Biol. 2016 21;395:97-102. [doi: 10.1016/j.jtbi.2016.01.029]
7. Souto-Maior C, Lopes JS, Gjini E, Struchiner CJ, Teixeira L, Gomes MGM. Heterogeneity in symbiotic effects facilitates Wolbachia establishment in insect populations. Theoretical Ecology 2015;8:53–65. [doi: 10.1007/s12080-014-0235-7]
6. Pessoa D, Souto-Maior C, Gjini E, et al. Unveiling Time in Dose-Response Models to Infer Host Susceptibility to Pathogens. PLoS Comput Biol 2014;10:e1003773. [doi: 10.1371/journal.pcbi.1003773] [data] [code]
preprints
5. Souto-Maior C. “Extraordinarily corrupt or statistically commonplace? Reproducibility crises may stem from a lack of understanding of outcome probabilities”. Phil Sci Archive 2022
4. Souto-Maior C, Lin Y, Serrano Negron YL, Harbison ST. “Multiple shifts in gene network interactions shape phenotypes of Drosophila melanogaster selected for long and short night sleep duration”. bioRxiv 2021; 2021.07.11.451943. [doi: 10.1101/2021.07.11.451943]
3. Gomes MGM, Corder RM, King JG, Langwig KE, Souto-Maior C, Carneiro J, Penha-Goncalves C, Ferreira MU, Aguas R. Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold medRxiv 2020:20081893; [doi: 10.1101/2020.04.27.20081893]
2. Souto-Maior C. Multiple-serotype models of dengue virus transmission: simulation study and perspectives for the application of inference in epidemiological surveillance bioRxiv 2019:583351; [doi: 10.1101/583351]
book chapters and others
1. Souto-Maior C. “Host–Symbiont–Pathogen–Host Interactions: Wolbachia, Vector-Transmitted Human Pathogens, and the Importance of Quantitative Models of Multipartite Coevolution”. In. Reticul. Evol. Symbiogenesis, Lateral Gene Transf. Hybrid. Infect. Hered. Gontier, Nathalie (Ed.) 2015 pp 207–230.